We are happy to announce the release of PEAKS 7.
The focus of this release is de novo sequencing improvements and a new label free quantification algorithm. The software is available for download here.
Aside from many improvements in PEAKS itself, we have been collaborating with Proteome Software and the Skyline group to ensure that PEAKS results can be imported there. Please check out the New Features in PEAKS 7 page for a long list of excitements.
We have also put up a web page talking about protein quantification. You can read it here.